学者信息

叶从庭 (CongTing Ye)

环境与生态学院

ORCID:0000-0003-4803-2098

合作者

已发表成果:

WOK 论文 35 篇;

  • U4 snRNP inhibits premature cleavage and polyadenylation of pre- mRNAs

    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,0027-8424,2024-07-02.
    Feng, Qiumin; Zhao, Danhui; Lin, Zejin; Li, Mengzhao; Xiang, Andy Peng; Ye, Congting; Yao, Chengguo
    WOS:001263367200014   10.1073/pnas.2406710121
    收录情况:SCIE
  • The U1 antisense morpholino oligonucleotide (AMO) disrupts U1 snRNP structure to promote intronic PCPA modification of pre-mRNAs

    JOURNAL OF BIOLOGICAL CHEMISTRY,0021-9258,2023-07.
    Feng, Qiumin; Lin, Zejin; Deng, Yanhui; Ran, Yi; Yu, Rui; Xiang, Andy Peng; Ye, Congting; Yao, Chen...
    WOS:001166292600001   EI:20232414248962   10.1016/j.jbc.2023.104854
    收录情况:SCIE、EI
  • Inhibitor AN3661 reveals biological functions of Arabidopsis CLEAVAGE and POLYADENYLATION SPECIFICITY FACTOR 73

    PLANT PHYSIOLOGY,0032-0889,2023-06-19.
    Hao, Saiqi; Zhang, Lidan; Zhao, Danhui; Zhou, Jiawen; Ye, Congting; Qu, Haidong; Li, Qingshun Q.
    WOS:001050614800001   10.1093/plphys/kiad352
    收录情况:SCIE
  • A Survey on Methods for Predicting Polyadenylation Sites from DNA Sequences, Bulk RNA-seq, and Single-cell RNA-seq

    GENOMICS PROTEOMICS & BIOINFORMATICS,1672-0229,2023-02.
    Ye, Wenbin; Lian, Qiwei; Ye, Congting; Wu, Xiaohui
    WOS:001051888400001   10.1016/j.gpb.2022.09.0051672-0229
    收录情况:SCIE
  • Uninterrupted embryonic growth leading to viviparous propagule formation in woody mangrove

    FRONTIERS IN PLANT SCIENCE,1664-462X,2023-01-04.
    Zhou, Xiaoxuan; Weng, Yulin; Su, Wenyue; Ye, Congting; Qu, Haidong; Li, Qingshun Quinn
    WOS:000913949200001   10.3389/fpls.2022.1061747
    收录情况:SCIE
  • Selecting Representative Samples From Complex Biological Datasets Using K-Medoids Clustering

    FRONTIERS IN GENETICS,,2022-07-18.
    Li, Lei; Lan, Linda Yu-Ling; Huang, Lei; Ye, Congting; Andrade, Jorge; Wilson, Patrick C. C.
    WOS:000886079300001   10.3389/fgene.2022.954024
    收录情况:SCIE
  • Plastid development of albino viviparous propagules in the woody mangrove species of Kandelia obovata

    TREE PHYSIOLOGY,0829-318X,2022-06.
    Hao, Saiqi; Hu, Wei; Ye, Congting; Shen, Yingjia; Li, Qingshun Q.
    WOS:000834370200001   10.1093/treephys/tpac063
    收录情况:SCIE
  • Alternative polyadenylated mRNAs behave as asynchronous rhythmic transcription in Arabidopsis

    RNA BIOLOGY,1547-6286,2021-12-02.
    Lin, Juncheng; Yu, Zhibo; Ye, Congting; Hong, Liwei; Chu, Yiru; Shen, Yingjia; Li, Qingshun Q.
    WOS:000658617600001   10.1080/15476286.2021.1933732
    收录情况:SCIE
  • QuantifyPoly(A): reshaping alternative polyadenylation landscapes of eukaryotes with weighted density peak clustering

    BRIEFINGS IN BIOINFORMATICS,1467-5463,2021-11.
    Ye, Congting; Zhao, Danhui; Ye, Wenbin; Wu, Xiaohui; Ji, Guoli; Li, Qingshun Q.; Lin, Juncheng
    WOS:000733325700138   10.1093/bib/bbab268
    收录情况:SCIE
  • Intragenic heterochromatin-mediated alternative polyadenylation modulates miRNA and pollen development in rice

    NEW PHYTOLOGIST,0028-646X,2021-10.
    You, Li-Yuan; Lin, Juncheng; Xu, Hua-Wei; Chen, Chun-Xiang; Chen, Jun-Yu; Zhang, Jinshan; Zhang, Ji...
    WOS:000682744800001   10.1111/nph.17635
    收录情况:SCIE
  • movAPA: modeling and visualization of dynamics of alternative polyadenylation across biological samples

    BIOINFORMATICS,1367-4803,2021-08-15.
    Ye, Wenbin; Liu, Tao; Fu, Hongjuan; Ye, Congting; Ji, Guoli; Wu, Xiaohui
    WOS:000703909800033   10.1093/bioinformatics/btaa997
    收录情况:SCIE
  • Multi-omics analyses on Kandelia obovata reveal its response to transplanting and genetic differentiation among populations

    BMC PLANT BIOLOGY,1471-2229,2021-07-19.
    Zhao, Yuze; Zhong, Yifan; Ye, Congting; Liang, Pingping; Pan, Xiaobao; Zhang, Yuan-Ye; Zhang, Yihui...
    WOS:000675828200001   10.1186/s12870-021-03123-1
    收录情况:SCIE
  • scAPAtrap: identification and quantification of alternative polyadenylation sites from single-cell RNA-seq data

    BRIEFINGS IN BIOINFORMATICS,1467-5463,2021-07.
    Wu, Xiaohui; Liu, Tao; Ye, Congting; Ye, Wenbin; Ji, Guoli
    WOS:000709466800045   10.1093/bib/bbaa273
    收录情况:SCIE
  • QPAT-seq, a rapid and deduplicatable method for quantification of poly(A) site usages

    MRNA 3' END PROCESSING AND METABOLISM,0076-6879,2021.
    Lin, Juncheng; Ye, Congting; Li, Qingshun Q.
    WOS:000710456700005   10.1016/bs.mie.2021.04.002
    收录情况:SCIE
  • HDA6-dependent histone deacetylation regulates mRNA polyadenylation in Arabidopsis

    GENOME RESEARCH,1088-9051,2020-10.
    Lin, Juncheng; Hung, Fu-Yu; Ye, Congting; Hong, Liwei; Shih, Yuan-Hsin; Wu, Keqiang; Li, Qingshun Q.
    WOS:000577121300003   10.1101/gr.255232.119
    收录情况:SCIE
  • A survey on identification and quantification of alternative polyadenylation sites from RNA-seq data

    BRIEFINGS IN BIOINFORMATICS,1467-5463,2020-07.
    Chen, Moliang; Ji, Guoli; Fu, Hongjuan; Lin, Qianmin; Ye, Congting; Ye, Wenbin; Su, Yaru; Wu, Xiaoh...
    WOS:000576139100011   10.1093/bib/bbz068
    收录情况:SCIE
  • scDAPA: detection and visualization of dynamic alternative polyadenylation from single cell RNA-seq data

    BIOINFORMATICS,1367-4803,2020-02-15.
    Ye, Congting; Zhou, Qian; Wu, Xiaohui; Yu, Chen; Ji, Guoli; Saban, Daniel R.; Li, Qingshun Q.
    WOS:000518528800039   10.1093/bioinformatics/btz701
    收录情况:SCIE
  • scHinter: imputing dropout events for single-cell RNA-seq data with limited sample size

    BIOINFORMATICS,1367-4803,2020-02-01.
    Ye, Pengchao; Ye, Wenbin; Ye, Congting; Li, Shuchao; Ye, Lishan; Ji, Guoli; Wu, Xiaohui
    WOS:000515095200019   10.1093/bioinformatics/btz627
    收录情况:SCIE
  • PlantAPAdb: A Comprehensive Database for Alternative Polyadenylation Sites in Plants

    PLANT PHYSIOLOGY,0032-0889,2020-01.
    Zhu, Sheng; Ye, Wenbin; Ye, Lishan; Fu, Hongjuan; Ye, Congting; Xiao, Xuesong; Ji, Yuanhaowei; Lin,...
    WOS:000508968100019   10.1104/pp.19.00943
    收录情况:SCIE
  • Discovery of alternative polyadenylation dynamics from single cell types

    Computational and Structural Biotechnology Journal,2001-0370,2020.
    Ye, Congting; Lin, Juncheng; Li, Qingshun Q.
    WOS:000607729400001   EI:20201808591113   10.1016/j.csbj.2020.04.009
    收录情况:SCIE、EI
  • Genome-wide alternative polyadenylation dynamics in response to biotic and abiotic stresses in rice

    ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY,0147-6513,2019-11-15.
    Ye, CT; Zhou, Q; Wu, XH; Ji, GL; Li, QSQ
    WOS:000487178000074   10.1016/j.ecoenv.2019.109485
    收录情况:SCIE
  • Identification of putative key genes for coastal environments and cold adaptation in mangrove Kandelia obovata through transcriptome analysis

    Science of the Total Environment,0048-9697,2019-09-01.
    Su, Wenyue (1); Ye, Congting (1); Zhang, Yihui (1); Hao, Saiqi (1); Li, Qingshun Quinn (1, 2)
    WOS:000469847200018   EI:20192006933753   10.1016/j.scitotenv.2019.05.127
    收录情况:SCIE、EI
  • Modeling of Genome-Wide Polyadenylation Signals in Xenopus tropicalis

    FRONTIERS IN GENETICS,1664-8021,2019-07-03.
    Zhu, S; Wu, XH; Fu, HJ; Ye, CT; Chen, ML; Jiang, ZH; Ji, GL
    WOS:000473699700001   10.3389/fgene.2019.00647
    收录情况:SCIE
  • Role of alternative polyadenylation dynamics in acute myeloid leukaemia at single-cell resolution

    RNA BIOLOGY,1547-6286,2019-06-03.
    Ye, CT; Zhou, Q; Hong, YL; Li, QQ
    WOS:000468288400007   10.1080/15476286.2019.1586139
    收录情况:SCIE
  • Root Hair Single Cell Type Specific Profiles of Gene Expression and Alternative Polyadenylation Under Cadmium Stress

    FRONTIERS IN PLANT SCIENCE,1664-462X,2019-05-10.
    Cao, JY; Ye, CT; Hao, GJ; Dabney-Smith, C; Hunt, AG; Li, QQ
    WOS:000467688000001   10.3389/fpls.2019.00589
    收录情况:SCIE
  • Differential alternative polyadenylation contributes to the developmental divergence between two rice subspecies, japonica and indica

    Plant Journal,0960-7412,2019.
    Zhou, Qian (1, 2); Fu, Haihui (1, 5); Yang, Dewei (3); Ye, Congting (1); Zhu, Sheng (4); Lin, Junch...
    WOS:000466782800006   EI:20190706507468   10.1111/tpj.14209
    收录情况:SCIE、EI
  • TSAPA: identification of tissue-specific alternative polyadenylation sites in plants

    BIOINFORMATICS,1367-4803,2018-06-15.
    Ji, GL; Chen, ML; Ye, WB; Zhu, S; Ye, CT; Su, YR; Peng, HN; Wu, XH
    WOS:000435461900018   10.1093/bioinformatics/bty044
    收录情况:SCIE
  • APAtrap: identification and quantification of alternative polyadenylation sites from RNA-seq data

    BIOINFORMATICS,1367-4803,2018-06-01.
    Ye, CT; Long, YQ; Ji, GL; Li, QQ; Wu, XH
    WOS:000434108800006   10.1093/bioinformatics/bty029
    收录情况:SCIE
  • AEGS: identifying aberrantly expressed gene sets for differential variability analysis

    BIOINFORMATICS,1367-4803,2018-03-01.
    Guan, Jinting; Chen, Moliang; Ye, Congting; Cai, James J.; Ji, Guoli
    WOS:000426813500026   10.1093/bioinformatics/btx646
    收录情况:SCIE
  • Transcriptome profiling during mangrove viviparity in response to abscisic acid

    SCIENTIFIC REPORTS,2045-2322,2018-01-15.
    Hong, Liwei; Su, Wenyue; Zhang, Yuanye; Ye, Congting; Shen, Yingjia; Li, Qingshun Q.
    WOS:000422637200029   10.1038/s41598-018-19236-x
    收录情况:SCIE
  • A two-layer model for gene clustering using poly(A) site data

    2017 3rd IEEE International Conference on Control Science and Systems Engineering, ICCSSE 2017,,2017-10-26.
    Ji, Guoli(1); Lin, Qianmin(1); Long, Yuqi(1); Ye, Congting(1); Ye, Wenbin(1); Wu, Xiaohui(1); Li, L...
    EI:20180204634213   10.1109/CCSSE.2017.8088009
    收录情况:EI
  • PAcluster: Clustering polyadenylation site data using canonical correlation analysis

    JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY,0219-7200,2017-10.
    Ji, Guoli; Lin, Qianmin; Long, Yuqi; Ye, Congting; Ye, Wenbin; Wu, Xiaohui
    WOS:000412733500004   10.1142/S0219720017500184
    收录情况:SCIE、CPCI-S
  • Genome-Wide Comparative Analysis of Miniature Inverted Repeat Transposable Elements in 19 Arabidopsis thaliana Ecotype Accessions

    SCIENTIFIC REPORTS,2045-2322,2017-06-01.
    Guo, Cheng; Spinelli, Matthew; Ye, Congting; Li, Qingshun Q.; Liang, Chun
    WOS:000402508400014   10.1038/s41598-017-02855-1
    收录情况:SCIE
  • Alternative polyadenylation is involved in auxin-based plant growth and development

    Plant Journal,0960-7412,2017.
    Hong, Liwei(1); Ye, Congting(1); Lin, Juncheng(1,2); Fu, Haihui(1); Wu, Xiaohui(3); Li, Qingshun Q....
    WOS:000419139400005   EI:20175104559390   10.1111/tpj.13771
    收录情况:SCIE、EI
  • Recent advances in mathematical modeling and simulation of DNA replication process

    Current Bioinformatics,1574-8936,2013.
    Ji, Guoli (1); Zeng, Yong (1); Guan, Jinting (1); Li, Qingshun Q. (2, 3); Ye, Congting (1); Liu, Yu...
    EI:20242116147865   10.2174/15748936113088880005
    收录情况:EI