学者信息

俞容山 (RongShan Yu)

信息学院

合作者

已发表成果:

WOK 论文 45 篇;中文核心 1 篇;

  • Lymphatic-localized Treg-mregDC crosstalk limits antigen trafficking and restrains anti-tumor

    CANCER CELL,1535-6108,2024-08-12.
    You, Siyuan; Li, Shuqin; Zeng, Lingsu; Song, Jinsheng; Li, Zifeng; Li, Weiyun; Ni, Hengxiao; Xiao, ...
    WOS:001296082600001   10.1016/j.ccell.2024.06.014
    收录情况:SCIE
  • FedSAC: Dynamic Submodel Allocation for Collaborative Fairness in Federated Learning

    arXiv,,2024-05-28.
    Wang, Zihui (1); Wang, Zheng (1); Lyu, Lingjuan (2); Peng, Pengzhao (1); Yang, Zhicheng (1); Wen, C...
    EI:20240244321   10.48550/arXiv.2405.18291
    收录情况:EI
  • SurvMamba: State Space Model with Multi-grained Multi-modal Interaction for Survival Prediction

    arXiv,,2024-04-11.
    Chen, Ying (1); Xie, Jiajing (2); Lin, Yuxiang (2); Song, Yuhang (1); Yang, Wenxian (3); Yu, Rongsh...
    EI:20240189953   10.48550/arXiv.2404.08027
    收录情况:EI
  • ConTIG: Continuous representation learning on temporal interaction graphs

    NEURAL NETWORKS,0893-6080,2024-04.
    Wang, Zihui; Yang, Peizhen; Fan, Xiaoliang; Yan, Xu; Wu, Zonghan; Pan, Shirui; Chen, Longbiao; Zang...
    WOS:001173901500001   EI:20241215756426   10.1016/j.neunet.2024.106151
    收录情况:SCIE、EI
  • FedAVE: Adaptive data value evaluation framework for collaborative fairness in federated learning

    Neurocomputing,0925-2312,2024-03-14.
    Wang, Zihui; Peng, Zhaopeng; Fan, Xiaoliang; Wang, Zheng; Wu, Shangbin; Yu, Rongshan; Yang, Peizhen...
    WOS:001170669500001   EI:20240515470979   10.1016/j.neucom.2023.127227
    收录情况:SCIE、EI
  • Generalizable Whole Slide Image Classification with Fine-Grained Visual-Semantic Interaction

    arXiv,,2024-02-29.
    Li, Hao (1); Chen, Ying (1); Chen, Yifei (2); Yang, Wenxian (3); Ding, Bowen (4); Han, Yuchen (4); ...
    EI:20240125973   10.48550/arXiv.2402.19326
    收录情况:EI
  • cgMSI: pathogen detection within species from nanopore metagenomic sequencing data

    BMC BIOINFORMATICS,1471-2105,2023-10-12.
    Zhu, Xu; Zhao, Lili; Huang, Lihong; Yang, Wenxian; Wang, Liansheng; Yu, Rongshan
    WOS:001081039600001   EI:20234214902419   10.1186/s12859-023-05512-9
    收录情况:SCIE、EI
  • SC-AIR-BERT: a pre-trained single-cell model for predicting the antigen-binding specificity of the adaptive immune receptor

    BRIEFINGS IN BIOINFORMATICS,1467-5463,2023-07.
    Zhao, Yu; Su, Xiaona; Zhang, Weitong; Mai, Sijie; Xu, Zhimeng; Qin, Chenchen; Yu, Rongshan; He, Bin...
    WOS:000990694200001   10.1093/bib/bbad191
    收录情况:SCIE
  • Dear-DIAXMBD: Deep Autoencoder Enables Deconvolution of Data-Independent Acquisition Proteomics

    RESEARCH,2096-5168,2023-06-06.
    He, Qingzu; Zhong, Chuan-Qi; Li, Xiang; Guo, Huan; Li, Yiming; Gao, Mingxuan; Yu, Rongshan; Liu, Xi...
    WOS:001027269900001   EI:20233214505024   10.34133/research.0179
    收录情况:SCIE、EI
  • Prioritizing prognostic-associated subpopulations and individualized recurrence risk signatures from single-cell transcriptomes of colorectal cancer

    BRIEFINGS IN BIOINFORMATICS,1467-5463,2023-05-19.
    Tong, Mengsha; Lin, Yuxiang; Yang, Wenxian; Song, Jinsheng; Zhang, Zheyang; Xie, Jiajing; Tian, Jin...
    WOS:000957305500001   10.1093/bib/bbad078
    收录情况:SCIE
  • Opioid-induced fragile-like regulatory T cells contribute to withdrawal

    CELL,0092-8674,2023-02-02.
    Zhu, Yongsheng; Yan, Peng; Wang, Rui; Lai, Jianghua; Tang, Hua; Xiao, Xu; Yu, Rongshan; Bao, Xiaoru...
    WOS:000963782400001   10.1016/j.cell.2022.12.030
    收录情况:SCIE
  • Editorial: Integrative analysis of single-cell and/or bulk multi-omics sequencing data

    FRONTIERS IN GENETICS,,2023-01-04.
    Chen, Geng; Yu, Rongshan; Chen, Xingdong
    WOS:000917140100001   10.3389/fgene.2022.1121999
    收录情况:SCIE
  • Hybrid Graph Convolutional Network With Online Masked Autoencoder for Robust Multimodal Cancer Survival Prediction

    IEEE Transactions on Medical Imaging,0278-0062,2023.
    Hou, Wentai; Lin, Chengxuan; Yu, Lequan; Qin, Jing; Yu, Rongshan; Wang, Liansheng
    WOS:001042097000027   EI:20231113736769   10.1109/TMI.2023.3253760
    收录情况:SCIE、EI
  • Multi-scope Analysis Driven Hierarchical Graph Transformer for Whole Slide Image Based Cancer Survival Prediction

    Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics),0302-9743,2023.
    Hou, Wentai; He, Yan; Yao, Bingjian; Yu, Lequan; Yu, Rongshan; Gao, Feng; Wang, Liansheng
    WOS:001109635100072   EI:20234314956226   10.1007/978-3-031-43987-2_72
    收录情况:EI、CPCI-S
  • Multi-omics signature for identification of RAS wild-type colorectal cancer liver metastases sensitive to anti-EGFR therapy

    ANNALS OF ONCOLOGY,0923-7534,2022-11.
    Liu, Y.; Zhou, S.; Chen, Y.; Xiao, X.; Wang, L.; Yu, R.; Chang, W.; Xu, J.
    WOS:000897943700262   10.1016/j.annonc.2022.10.290
    收录情况:SCIE、CPCI-S
  • Fedave: Adaptive Data Value Evaluation Framework for Collaborative Fairness in Federated Learning

    SSRN,1556-5068,2022-09-17.
    Wang, Zihui (1, 2); Fan, Xiaoliang (1, 2); Wang, Zheng (1); Wu, Shangbin (1); Yu, Rongshan (1, 2); ...
    EI:20220405135  
    收录情况:EI
  • H2-MIL: Exploring Hierarchical Representation with Heterogeneous Multiple Instance Learning for Whole Slide Image Analysis

    Proceedings of the 36th AAAI Conference on Artificial Intelligence, AAAI 2022,,2022-06-30.
    Hou, Wentai (1, 2); Yu, Lequan (3); Lin, Chengxuan (2, 4); Huang, Helong (4); Yu, Rongshan (4); Qin...
    EI:20230713574061  
    收录情况:EI
  • A downsampling method enables robust clustering and integration of single-cell transcriptome data

    Journal of Biomedical Informatics,1532-0464,2022-06.
    Ren, Jun; Zhang, Quan; Zhou, Ying; Hu, Yudi; Lyu, Xuejing; Fang, Hongkun; Yang, Jing; Yu, Rongshan;...
    WOS:000806515900002   EI:20222112147364   10.1016/j.jbi.2022.104093
    收录情况:SCIE、EI
  • Deepfakes: A new threat to image fabrication in scientific publications?

    Patterns,,2022-05-13.
    Wang, Liansheng (1); Zhou, Lianyu (1); Yang, Wenxian (2); Yu, Rongshan (1, 2, 3)
    EI:20222012112690   10.1016/j.patter.2022.100509
    收录情况:EI
  • Application of individualized differential expression analysis in human cancer proteome

    BRIEFINGS IN BIOINFORMATICS,1467-5463,2022-04.
    Liu, Yachen; Lin, Yalan; Yang, Wenxian; Lin, Yuxiang; Wu, Yujuan; Zhang, Zheyang; Lin, Nuoqi; Wang,...
    WOS:000786040700001   10.1093/bib/bbac096
    收录情况:SCIE
  • Open Problems in Extracellular RNA Data Analysis: Insights From an ERCC Online Workshop

    FRONTIERS IN GENETICS,,2022-01-03.
    Alexander, Roger P.; Kitchen, Robert R.; Tosar, Juan Pablo; Roth, Matthew; Mestdagh, Pieter; Max, K...
    WOS:000747305700001   10.3389/fgene.2021.778416
    收录情况:SCIE
  • DAISM-DNNXMBD: Highly accurate cell type proportion estimation with in silico data augmentation and deep neural networks

    Patterns,,2022.
    Lin, Yating (1); Li, Haojun (1); Xiao, Xu (1, 2); Zhang, Lei (3); Wang, Kejia (4); Zhao, Jingbo (5)...
    EI:20220811690681   10.1016/j.patter.2022.100440
    收录情况:EI
  • Spatial-Hierarchical Graph Neural Network with Dynamic Structure Learning for Histological Image Classification

    Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics),0302-9743,2022.
    Hou, Wentai; Huang, Helong; Peng, Qiong; Yu, Rongshan; Yu, Lequan; Wang, Liansheng
    WOS:000867288800018   EI:20224012829266   10.1007/978-3-031-16434-7_18
    收录情况:EI、CPCI-S
  • MuRCL: Multi-Instance Reinforcement Contrastive Learning for Whole Slide Image Classification

    IEEE Transactions on Medical Imaging,0278-0062,2022.
    Zhu, Zhonghang; Yu, Lequan; Wu, Wei; Yu, Rongshan; Zhang, Defu; Wang, Liansheng
    WOS:000982483400009   EI:20225213305137   10.1109/TMI.2022.3227066
    收录情况:SCIE、EI
  • Deep representation features from DreamDIA(XMBD) improve the analysis of data-independent acquisition proteomics

    COMMUNICATIONS BIOLOGY,,2021-10-14.
    Gao, Mingxuan; Yang, Wenxian; Li, Chenxin; Chang, Yuqing; Liu, Yachen; He, Qingzu; Zhong, Chuan-Qi;...
    WOS:000707387800006   10.1038/s42003-021-02726-6
    收录情况:SCIE
  • Dice-XMBD: Deep Learning-Based Cell Segmentation for Imaging Mass Cytometry

    FRONTIERS IN GENETICS,,2021-09-15.
    Xiao, Xu; Qiao, Ying; Jiao, Yudi; Fu, Na; Yang, Wenxian; Wang, Liansheng; Yu, Rongshan; Han, Jiahuai
    WOS:000724630000001   10.3389/fgene.2021.721229
    收录情况:SCIE
  • Snipe: highly sensitive pathogen detection from metagenomic sequencing data

    BRIEFINGS IN BIOINFORMATICS,1467-5463,2021-09.
    Huang, Lihong; Hong, Bin; Yang, Wenxian; Wang, Liansheng; Yu, Rongshan
    WOS:000709461800094   10.1093/bib/bbab064
    收录情况:SCIE
  • Genetic Determinants of Somatic Selection of Mutational Processes in 3,566 Human Cancers

    CANCER RESEARCH,0008-5472,2021-08.
    Guo, Jintao; Zhou, Ying; Xu, Chaoqun; Chen, Qinwei; Sztupinszki, Zsofia; Borcsok, Judit; Xu, Canqia...
    WOS:000685608800007   10.1158/0008-5472.CAN-21-0086
    收录情况:SCIE
  • Early neoplasia identification in Barrett's esophagus via attentive hierarchical aggregation and self-distillation

    Medical Image Analysis,1361-8415,2021-08.
    Hou, Wentai; Wang, Liansheng; Cai, Shuntian; Lin, Zhenyu; Yu, Rongshan; Qin, Jing
    WOS:000681315400009   EI:20212210443324   10.1016/j.media.2021.102092
    收录情况:SCIE、EI
  • Inconsistent prediction capability of ImmuneCells.Sig across different RNA-seq datasets

    NATURE COMMUNICATIONS,2041-1723,2021-07-07.
    Xiao, Xu; Xu, Canqiang; Yang, Wenxian; Yu, Rongshan
    WOS:000687325900035   10.1038/s41467-021-24303-5
    收录情况:SCIE
  • Comparison of high-throughput single-cell RNA sequencing data processing pipelines

    BRIEFINGS IN BIOINFORMATICS,1467-5463,2021-05.
    Gao, Mingxuan; Ling, Mingyi; Tang, Xinwei; Wang, Shun; Xiao, Xu; Qiao, Ying; Yang, Wenxian; Yu, Ron...
    WOS:000709461300061   10.1093/bib/bbaa116
    收录情况:SCIE
  • Ratio of the interferon-gamma signature to the immunosuppression signature predicts anti-PD-1 therapy response in melanoma

    NPJ GENOMIC MEDICINE,,2021-02-04.
    Cui, Chuanliang; Xu, Canqiang; Yang, Wenxian; Chi, Zhihong; Sheng, Xinan; Si, Lu; Xie, Yihong; Yu, ...
    WOS:000617165100002   10.1038/s41525-021-00169-w
    收录情况:SCIE
  • Diamond: a multi-modal DIA mass spectrometry data processing pipeline

    BIOINFORMATICS,1367-4803,2021-01-15.
    Li, Chenxin; Gao, Mingxuan; Yang, Wenxian; Zhong, Chuanqi; Yu, Rongshan
    WOS:000649439900018   10.1093/bioinformatics/btaa1093
    收录情况:SCIE
  • Using deep learning to predict anti-PD-1 response in melanoma and lung cancer patients from histopathology images

    TRANSLATIONAL ONCOLOGY,1936-5233,2021-01.
    Hu, Jing; Cui, Chuanliang; Yang, Wenxian; Huang, Lihong; Yu, Rongshan; Liu, Siyang; Kong, Yan
    WOS:000604582100017   10.1016/j.tranon.2020.100921
    收录情况:SCIE
  • Federated Learning with Fair Averaging

    IJCAI International Joint Conference on Artificial Intelligence,1045-0823,2021.
    Wang, Zheng (1); Fan, Xiaoliang (1); Qi, Jianzhong (2); Wen, Chenglu (1); Wang, Cheng (1); Yu, Rong...
    EI:20220911735173  
    收录情况:EI
  • ScSparkXMBD: High-Performance scRNA-seq Data Processing with Spark

    Proceedings - 2021 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2021,,2021.
    Liu, Yu (1); Gao, Mingxuan (1); Tan, Lixuan (1); Liu, Hongjin (1); Lin, Yating (1); Yang, Wenxian (...
    EI:20220911712380   10.1109/BIBM52615.2021.9669512
    收录情况:EI
  • A machine learning framework to determine geolocations from metagenomic profiling

    BIOLOGY DIRECT,,2020-11-23.
    Huang, Lihong; Xu, Canqiang; Yang, Wenxian; Yu, Rongshan
    WOS:000595677900002   10.1186/s13062-020-00278-z
    收录情况:SCIE
  • Specific TP53 subtype as biomarker for immune checkpoint inhibitors in lung adenocarcinoma

    EBIOMEDICINE,2352-3964,2020-10.
    Sun, Hao; Liu, Si-Yang; Zhou, Jia-Ying; Xu, Jin-Tian; Zhang, Huang-Kai; Yan, Hong-Hong; Huan, Jiao-...
    WOS:000580572100015   10.1016/j.ebiom.2020.102990
    收录情况:SCIE
  • ScaleQC: a scalable lossy to lossless solution for NGS data compression

    BIOINFORMATICS,1367-4803,2020-09-01.
    Yu, Rongshan; Yang, Wenxian
    WOS:000592968900003   10.1093/bioinformatics/btaa543
    收录情况:SCIE
  • Performance evaluation of lossy quality compression algorithms for RNA-seq data

    BMC Bioinformatics,,2020-07-20.
    Yu, Rongshan (1); Yang, Wenxian (1, 2); Wang, Shun (2)
    EI:20203409085879   10.1186/s12859-020-03658-4
    收录情况:EI
  • A novel approach combined transfer learning and deep learning to predict TMB from histology image

    Pattern Recognition Letters,0167-8655,2020-07.
    Wang, Liansheng (1); Jiao, Yudi (1); Qiao, Ying (2); Zeng, Nianyin (3); Yu, Rongshan (1)
    EI:20202008665807   10.1016/j.patrec.2020.04.008
    收录情况:EI
  • UltraStrain: An NGS-Based Ultra Sensitive Strain Typing Method for Salmonella enterica

    FRONTIERS IN GENETICS,1664-8021,2019-04-03.
    Yang, WX; Huang, LH; Shi, C; Wang, LS; Yu, RS
    WOS:000463435500001   10.3389/fgene.2019.00276
    收录情况:SCIE
  • Performance Evaluation of IMP: A Rapid Secondary Analysis Pipeline for NGS Data

    Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018,,2019-01-21.
    Wang, Shun (1, 2); Yang, Wenxian (1, 2); Zhang, Xiang (1); Yu, Rongshan (1, 2, 3)
    EI:20191006610303   10.1109/BIBM.2018.8621573
    收录情况:EI
  • Improving Coding Efficiency of MPEG-G Standard Using Context-Based Arithmetic Coding

    Proceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018,,2019-01-21.
    Yang, Wenxian (1, 2); Lin, Yating (3); Wu, Shiyao (3); Yu, Rongshan (1, 2, 3)
    EI:20191006610282   10.1109/BIBM.2018.8621550
    收录情况:EI
  • Predicting ICU mortality from heterogeneous clinical events with prior medical knowledge

    CEUR Workshop Proceedings,1613-0073,2019.
    Xiao, Lujing (1, 2, 3); Zheng, Chuanpan (1, 2); Fan, Xiaoliang (1, 2, 3); Xie, Yi (2); Yu, Rongshan...
    EI:20193607403134  
    收录情况:EI
  • 基于SEIR-LSTM混合模型的新型冠状病毒肺炎传播趋势分析与预测

    厦门大学学报(自然科学版),0438-0479,2020-11-28.
    洪彬;陈锦秀;王连生;俞容山
    CSCD核心